Package: snpAIMeR 2.1.1

snpAIMeR: Assess the Diagnostic Power of Genomic Marker Combinations

Population genetics package for designing diagnostic panels. Candidate markers, marker combinations, and different panel sizes are assessed for how well they can predict the source population of known samples. Requires a genotype file of candidate markers in STRUCTURE format. Methods for population cross-validation are described in Jombart (2008) <doi:10.1093/bioinformatics/btn129>.

Authors:Kim Vertacnik [cre, aut], Oksana Vernygora [aut], Julian Dupuis [aut]

snpAIMeR_2.1.1.tar.gz
snpAIMeR_2.1.1.zip(r-4.5)snpAIMeR_2.1.1.zip(r-4.4)snpAIMeR_2.1.1.zip(r-4.3)
snpAIMeR_2.1.1.tgz(r-4.4-any)snpAIMeR_2.1.1.tgz(r-4.3-any)
snpAIMeR_2.1.1.tar.gz(r-4.5-noble)snpAIMeR_2.1.1.tar.gz(r-4.4-noble)
snpAIMeR_2.1.1.tgz(r-4.4-emscripten)snpAIMeR_2.1.1.tgz(r-4.3-emscripten)
snpAIMeR.pdf |snpAIMeR.html✨
snpAIMeR/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/oksanave/snpaimer/issues

On CRAN:

1 exports 0.23 score 89 dependencies 1 scripts 160 downloads

Last updated 7 months agofrom:7049c037e3. Checks:OK: 7. Indexed: yes.

Exports:snpAIMeR

Dependencies:ade4adegenetapebase64encbitbit64bootbslibcachemclicliprclustercodetoolscolorspacecommonmarkcpp11crayondigestdoParalleldplyrfansifarverfastmapfontawesomeforcatsforeachfsgenericsggplot2gluegtablehmshtmltoolshttpuvigraphisobanditeratorsjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepermutepillarpixmappkgconfigplyrprettyunitsprogresspromisespurrrR6rappdirsRColorBrewerRcppRcppArmadilloreadrreshape2rlangsassscalessegmentedseqinrshinysourcetoolsspstringistringrtibbletidyrtidyselecttzdbutf8vctrsveganviridisLitevroomwithrxtableyaml