Package: snpAIMeR 2.1.1

snpAIMeR: Assess the Diagnostic Power of Genomic Marker Combinations

Population genetics package for designing diagnostic panels. Candidate markers, marker combinations, and different panel sizes are assessed for how well they can predict the source population of known samples. Requires a genotype file of candidate markers in STRUCTURE format. Methods for population cross-validation are described in Jombart (2008) <doi:10.1093/bioinformatics/btn129>.

Authors:Kim Vertacnik [cre, aut], Oksana Vernygora [aut], Julian Dupuis [aut]

snpAIMeR_2.1.1.tar.gz
snpAIMeR_2.1.1.zip(r-4.7-any)snpAIMeR_2.1.1.zip(r-4.6-any)snpAIMeR_2.1.1.zip(r-4.5-any)
snpAIMeR_2.1.1.tgz(r-4.6-any)snpAIMeR_2.1.1.tgz(r-4.5-any)
snpAIMeR_2.1.1.tar.gz(r-4.7-any)snpAIMeR_2.1.1.tar.gz(r-4.6-any)
snpAIMeR_2.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
snpAIMeR/json (API)

# Install 'snpAIMeR' in R:
install.packages('snpAIMeR', repos = c('https://kvertacnik.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/oksanave/snpaimer/issues

On CRAN:

Conda:

1.70 score 1 scripts 243 downloads 1 exports 88 dependencies

Last updated from:7049c037e3. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK164
source / vignettesOK195
linux-releaseOK171
macos-releaseOK164
macos-oldrelOK180
windows-develOK79
windows-releaseOK101
windows-oldrelOK79
wasm-releaseOK111

Exports:snpAIMeR

Dependencies:ade4adegenetapebase64encbitbit64bootbslibcachemclicliprclustercodetoolscommonmarkcpp11crayondigestdoParalleldplyrfarverfastmapfontawesomeforcatsforeachfsgenericsggplot2gluegtablehmshtmltoolshttpuvigraphisobanditeratorsjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimenlmeotelpermutepillarpixmappkgconfigplyrprettyunitsprogresspromisespurrrR6rappdirsRColorBrewerRcppRcppArmadilloreadrreshape2rlangS7sassscalessegmentedseqinrshinysourcetoolsspstringistringrtibbletidyrtidyselecttzdbutf8vctrsveganviridisLitevroomwithrxtableyaml